Installation

First Install CD-HIT. Mamba is recommended. For example, to create an environment and install:

mamba create -n myenv python=3.10
mamba activate myenv

mamba install -c bioconda cd-hit cd-hit-auxtools

Then install this package from PyPI:

pip install py-cdhit

Development

Install from source after git clone:

cd py-cdhit
pip install -e '.[dev]'
pip install -r docs/requirements.txt
python -m pytest --cov-report term-missing --cov=pycdhit tests/